Income Tax Refund Delays Hit Taxpayers as Department Expands Scrutiny

2 min read     Updated on 29 Dec 2025, 03:29 PM
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Reviewed by
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Overview

Income tax refunds in India are facing significant delays, affecting taxpayers across income brackets. The tax department has shifted its approach, placing a majority of cases on hold for extended scrutiny. Refunds above ₹10,000 may be subject to additional review. The department is cross-referencing large transactions and property purchases, even when not claimed for exemptions. Taxpayers are receiving communications requesting review of deductions and exemptions. Experts advise against unnecessary return revisions and recommend cross-verifying all disclosures before filing.

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Taxpayers who filed their income tax returns on time are facing unusually long delays in refund processing, even for seemingly complete and error-free submissions. The widespread delays have affected taxpayers across income brackets, creating uncertainty about timelines and underlying reasons for the hold-ups.

Fundamental Shift in Processing Approach

Tax expert Gauri Chadha has identified a significant change in how refunds are being processed. Unlike previous years, a majority of cases have reportedly been placed on hold, with even the basic processing of returns experiencing delays. This represents a departure from the traditional one to two-week refund timeline that taxpayers had come to expect.

The current delays extend beyond routine processing issues such as failure to e-verify returns, incorrect bank validation, or adjustments against outstanding tax demands from previous years. The scale of scrutiny appears to have expanded significantly, potentially affecting a much larger pool of taxpayers than the usual high-income or high-risk profiles.

Refund Amount Thresholds Under Review

While the income tax department has not published official thresholds, observable patterns suggest specific refund amounts may trigger additional scrutiny:

Refund Amount Scrutiny Level
Above ₹10,000 May be held up
Above ₹50,000 More common scrutiny possible
Above ₹1 lakh Enhanced review process likely

The department is also reportedly flagging property purchases and other large transactions, even when taxpayers are not claiming related exemptions. Transactions are being cross-referenced through various reporting mechanisms, regardless of whether they need to be disclosed in the return.

Communications vs Formal Notices

A significant number of taxpayers have reportedly received messages from the income tax department requesting review of deductions, exemptions, and high-value transactions. Chadha emphasized that these are communications rather than formal notices, though the distinction has not always been clear to recipients.

The department has clarified that if no error exists on the taxpayer's end, these communications can be ignored. However, missing the response deadline may increase compliance costs, as taxpayers might need to file updated returns, which could carry higher penalties and interest.

Expected Timeline and Recommendations

Legally, the income tax department has until the end of the next financial year to process returns. However, Chadha expects movement only after the December 31 deadline for revising returns passes. She advises against unnecessary return revisions, recommending that taxpayers revise only when actual discrepancies exist.

Administrative Contributing Factors

Several administrative elements have reportedly compounded the processing delays:

  • Late release of filing utilities
  • Extended filing deadlines
  • Shortened window for revising returns compared to previous years
  • Increased complexity from regime switching between old and new tax structures

Key Actions for Taxpayers

To minimize delays, taxpayers should cross-verify all disclosures before filing and ensure that even exempt income is properly reported. Leaving out any income, regardless of its taxable status, may create red flags in the system. For those switching between tax regimes, proper completion of Form 10-IA and its acknowledgment number becomes critical during the filing process.

Expanded Scrutiny Beyond Routine Cases

The income tax department has reportedly expanded its scrutiny process, going beyond routine error checks. Tax experts have flagged this expanded scrutiny as a key reason for the unusual delays in processing refunds. Notably, refunds above ₹10,000 are reportedly being subjected to additional review, which may affect a large number of taxpayers.

This expanded scrutiny could represent a fundamental shift in the department's approach, moving from targeted reviews of high-risk or high-income profiles to a more comprehensive examination of a broader range of tax returns. The change has led to widespread delays, even for taxpayers with seemingly straightforward returns.

Taxpayers are advised to be patient and prepared for potential inquiries from the tax department. While the increased scrutiny may lead to short-term inconveniences, it is part of the department's efforts to ensure compliance and accuracy in tax filings. As the situation evolves, taxpayers should stay informed about any updates or communications from the income tax department regarding their refund status.

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PAN-Aadhaar Linking: Step-by-Step Guide as December 31 Deadline Approaches

3 min read     Updated on 29 Dec 2025, 10:23 AM
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Reviewed by
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Overview

With just two days left before the December 31, 2025 deadline, the Income Tax Department has issued urgent reminders for PAN-Aadhaar linking completion. Missing the deadline will result in a ₹1,000.00 late fee and inoperative PAN, disrupting essential financial services including banking, investments, and tax compliance. The article provides a comprehensive step-by-step guide for the linking process through the e-filing portal, along with details on two other critical tax deadlines: revised income tax return filing for AY 2025-26 and annual GST return submission for businesses.

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With just two days remaining, the Income Tax Department has issued urgent reminders for taxpayers to complete their PAN-Aadhaar linking before the December 31, 2025 deadline. This critical compliance requirement, along with revised income tax return filing and GST annual returns, represents one of three major tax deadlines converging on the final day of the year.

Taxpayers face three crucial deadlines by December 31:

  1. Aadhaar-PAN linking with ₹1,000.00 late fee penalty
  2. Revised ITR filing for AY 2025-26
  3. Annual GST return submission

Missing these deadlines could disrupt financial transactions and compliance significantly.

Aadhaar-PAN Linking: Deadline and Consequences

The Income Tax Department has established December 31, 2025, as the final deadline for taxpayers to link their Aadhaar with their Permanent Account Number (PAN). This requirement specifically applies to individuals who received their Aadhaar on or before October 1, 2024.

Requirement Details
Deadline December 31, 2025
Applicable to Aadhaar holders from October 1, 2024, or earlier
Late Fee ₹1,000.00 after deadline
Consequence PAN becomes inoperative if not linked

Failure to complete this linking process will render the PAN inoperative, creating substantial disruptions across multiple financial activities. Those who miss the deadline will have to pay a late fee of ₹1,000.00 to complete the PAN-Aadhaar linking process, and the PAN will remain inoperative until the fee is paid and linkage is successfully completed.

Key areas affected by inoperative PAN include:

  • Opening new bank accounts
  • Issuance of debit or credit cards
  • Purchasing mutual fund units
  • Cash deposits exceeding prescribed limits
  • Income tax return filing and processing
  • Tax refund disbursements
  • Banking transactions and investments
  • High-value financial activities

Step-by-Step PAN-Aadhaar Linking Process

To link Aadhaar and PAN, users must first complete the payment process on the Income Tax e-filing portal through the following steps:

Initial Setup and Payment:

  1. Visit the Income Tax Department's e-filing portal and log in using your credentials
  2. Go to the Profile section and select the 'Link Aadhaar' option
  3. Enter your Aadhaar and PAN details and proceed to e-Pay Tax
  4. Enter your PAN and verify it using the OTP sent to your registered mobile number

Payment Process:

  1. Once verified, you will be redirected to the e-Pay Tax page
  2. Click on 'Proceed' under the Income Tax tile
  3. Select the relevant assessment year and choose 'Other receipts' as the type of payment
  4. The applicable fee will be auto-filled
  5. Continue to generate the challan and complete the payment
Process Step Action Required
Portal Access Login to Income Tax e-filing portal
Verification OTP confirmation via registered mobile
Payment Type Select 'Other receipts'
Fee Amount Auto-filled based on requirement

Submitting the Linking Request: After paying the fee, return to the e-filing portal and click on the 'Link Aadhaar to PAN' option. Enter your Aadhaar number and select 'Validate'. Once verification is complete, the linking request will be submitted. Users can track the Aadhaar-PAN linking status on the same portal.

Additional Tax Compliance Deadlines

Revised Income Tax Return Filing

December 31, 2025, also represents the final opportunity for taxpayers to file revised or belated income tax returns for assessment year 2025-26. This provision, governed under Section 139(5) of the Income Tax Act, allows taxpayers to correct errors or omissions in their previously submitted returns.

Filing Type Assessment Year Deadline
Revised/Belated ITR 2025-26 December 31, 2025
Financial Year 2024-25 Covered period

Annual GST Return Compliance

GST-registered businesses face their annual return filing deadline on December 31, 2025. This comprehensive return consolidates the entire financial year's GST-related transactions and compliance data, including total sales figures, input tax credit claims, detailed tax payment records, and refund amounts received during the period.

Critical Compliance Recommendations

If the PAN is already linked with another Aadhaar number, users will need to contact their jurisdictional assessing officer and submit a request for delinking. The convergence of these three major compliance requirements on December 31 underscores the importance of immediate action to avoid financial disruptions and regulatory penalties that could impact operations throughout the following year.

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